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Freshwater Fish Habitat Complexity Mapping Using Above and Underwater Structure-From-Motion Photogrammetry

Posted: 07 Jan 2019, 05:35
by TwoTankAmin
Margaret Kalacska, Oliver Lucanus, Leandro Sousa, Thiago Vieira, Juan Pablo Arroyo-Mora (2018) Freshwater Fish Habitat Complexity Mapping Using Above and Underwater Structure-From-Motion Photogrammetry. Remote Sensing, vol. 10, issue 12, p. 1912
https://res.mdpi.com/remotesensing/remo ... tachment=1
Abstract: Substrate complexity is strongly related to biodiversity in aquatic habitats. We illustrate a
novel framework, based on Structure-from-Motion photogrammetry (SfM) and Multi-View Stereo
(MVS) photogrammetry, to quantify habitat complexity in freshwater ecosystems from Unmanned
Aerial Vehicle (UAV) and underwater photography. We analysed sites in the Xingu river basin, Brazil,
to reconstruct the 3D structure of the substrate and identify and map habitat classes important for
maintaining fish assemblage biodiversity. From the digital models we calculated habitat complexity
metrics including rugosity, slope and 3D fractal dimension. The UAV based SfM-MVS products were
generated at a ground sampling distance (GSD) of 1.20–2.38 cm while the underwater photography
produced a GSD of 1 mm. Our results show how these products provide spatially explicit complexity
metrics, which are more comprehensive than conventional arbitrary cross sections. Shallow neural
network classification of SfM-MVS products of substrate exposed in the dry season resulted in
high accuracies across classes. UAV and underwater SfM-MVS is robust for quantifying freshwater
habitat classes and complexity and should be chosen whenever possible over conventional methods
(e.g., chain-and-tape) because of the repeatability, scalability and multi-dimensional nature of the
products. The SfM-MVS products can be used to identify high priority freshwater sectors for
conservation, species occurrences and diversity studies to provide a broader indication for overall
fish species diversity and provide repeatability for monitoring change over time.
Keywords: Brazil; fractal dimension; neural network; river; rugosity; UAV; underwater; Xingu river

Re: Freshwater Fish Habitat Complexity Mapping Using Above and Underwater Structure-From-Motion Photogrammetry

Posted: 10 Jan 2019, 09:19
by Jools
Not that I did any work, but I was on the field trip which sourced this data. It was a privilidege to watch the guys work. Even if you're not in all the cool science, part of the work produced the links below to get a zoomable 3D view of classic Xingu habits.

(a) Cachoeira Iriri, https://bit.ly/iriri3D
(b) Retroculus site, https://bit.ly/retroculus
(c) Cachoeira Culuene, https://bit.ly/culuene
(d) Cachoeira do Xadá, https://bit.ly/xadarapids

Examples of the habitat classes ranging from
sand and pebbles to large boulders exposed in the dry season. Areas of deep/turbid water and white
water can also be seen.

Jools

Re: Freshwater Fish Habitat Complexity Mapping Using Above and Underwater Structure-From-Motion Photogrammetry

Posted: 11 Jan 2019, 16:19
by TwoTankAmin
The other thing that stood out to me was that zebras exclusively live in the boulder habitat. This dovetails with the failure of the attempt to establish a new population of zebras in another river if I recall properly? But the identified fish species found only in the Volta Grande is not limited to zebras.

For the truly curious, here is an interesting paper for your consideration:
Experts Panel Assesses Belo Monte Dam Viability
October, 2009

The Experts Panel is comprised of volunteer researchers, and was formed in
response to a request by social movements in the region of Altamira, Pará,
Brazilian Amazon that would be affected by the Belo Monte Dam. It was
made possible by support from the Fundação Viver, Produzir e Preservar of
Altamira, WWF Brasil, Instituto Sócio Ambiental, International Rivers, FASE
and the Rede de Justiça Ambiental.
http://assets.survivalinternational.org ... ct2009.pdf